Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LIHC | rs1105272 | chr4:44727760 | C/G | 8.62E-6 | 191 | 3.03 | 13.55 | 16.07 | KM Plot |
| LIHC | rs11053503 | chr12:10055523 | G/A | 5.54E-5 | 188 | 13.73 | 12.87 | 4.3 | KM Plot |
| LIHC | rs11053505 | chr12:10055818 | C/T | 3.76E-5 | 192 | 13.78 | 12.53 | 4.3 | KM Plot |
| LIHC | rs11053506 | chr12:10055929 | C/T | 4.58E-5 | 191 | 13.78 | 12.2 | 4.3 | KM Plot |
| LIHC | rs1105938 | chr3:112314753 | C/G | 0.000431 | 191 | 13.58 | 11.98 | 3.43 | KM Plot |
| LIHC | rs11066040 | chr12:112262789 | T/A | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs11066044 | chr12:112283546 | C/T | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs11066045 | chr12:112283551 | C/A | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs11066046 | chr12:112283881 | T/C | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs11066054 | chr12:112306165 | G/T | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs11066055 | chr12:112313216 | A/T | 7.96E-6 | 192 | 12.57 | 14.85 | 4.03 | KM Plot |
| LIHC | rs11066058 | chr12:112317320 | T/C | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs11066062 | chr12:112320947 | C/T | 6.67E-6 | 191 | 12.57 | 14.9 | 4.03 | KM Plot |
| LIHC | rs11066077 | chr12:112346661 | C/T | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs11066078 | chr12:112347904 | G/A | 8.07E-6 | 191 | 12.57 | 14.9 | 4.03 | KM Plot |